The Translational Research Program in Cancer Differences across Populations. Article

Full Text via DOI: 10.1158/1055-9965.EPI-24-1711 PMID: 40576634

Cited authors

  • Figueiredo, Redwood, Li, Donato, Fort, Fox, Grady, Green, Harrison, Haupt, Hsu, Hullar, Huyghe, Johnson, Koehne, LaBrie, Lakey, Lin, LoroƱa, Maresh, Matrana, Mizrahi, Nash, Nguyen, Paruch, Phipps, Qu, Randolph, Romo, Thomas, Thomas, Tiesinga, Whitlow, Yeung, Yin, Zibilich, Li, Thomas, Peters

Abstract

  • BACKGROUND\nMETHODS\nRESULTS\nCONCLUSION\nIMPACT\nColorectal cancer (CRC) incidence and mortality vary substantially across populations. The Translational Research Program in Cancer Differences across Populations (TRPCDP) was established in 2020 to address differences in CRC incidence and mortality rates within the United States.\nTRPCDP centralized data acquisition and harmonization across three sites in the U.S. to create a well-annotated resource of CRC tumors across four populations: African American/Black, Alaska Native, Hispanic/Latino/a, and non-Hispanic White. Using a case-control framework, patients with lethal CRC were matched to two controls with non-lethal CRC. Formalin-fixed paraffin-embedded tumor and normal tissue were retrieved and sent for centralized pathology review, followed by DNA and RNA extraction and tissue microarray development. Multi-omics and spatial profiling are underway to evaluate the transcriptome, proteome, and microbiome. Patient demographic and clinical data were obtained by medical record review, patient self-report, or linkage to cancer registries. Additional health-related factors were assessed using geospatial linkage.\nThe virtual biorepository includes 7,181 patients [African American (n=1,345), Alaska Native (n=1,640), Hispanic (n=1,659), and non-Hispanic White (n=2,537)]. Tissue blocks (1,594 tumor, 728 normal colon) were selected for 938 patients. To date, DNA and RNA have been extracted (n=831) and tissue microarrays have been constructed (n=414). Transcriptomic, spatial tumor profiling (multiplex immunofluorescence, PhenoCycler, GeoMx) and microbiome data (16S rRNAseq, ddPCR) are available.\nThe TRPCDP has developed a clinically annotated biorepository for future molecular epidemiology studies.\nTRPCDP is a unique program that supports collaborative research, community engagement, and pipeline development for the next generation of scientists.

Authors

Publication date

  • 2025

International Standard Serial Number (ISSN)

  • 1055-9965